This dataset includes accession numbers archived at IMG/M (Integrated Microbial Genomes and Microbiome Samples) at the US Dept. of Energy's Joint Genome Institute. Additional information includes the ocean depth, latitude and longitude, the assembled genome size and count, and the scaffold count.
Some of the accessions are not yet available [2017-10-27]. A free login account is required to access some of the pages at IMG, in particular, those located at img.jgi.doe.gov/cgi-bin/mer/.
Publications using this dataset:
Pachiadaki MG, Sintes E, Bergauer K, Brown JM, Record NR, Swan BK, Mathyer ME, Hallam SJ, Lopez-Garcia P, Takaki Y, Nunoura T, Woyke T, Herndl GJ, Stepanauskas R (2017). Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation. Science 358 (6366): 1046-1051.
Bergauer K, Fernandez-Guerra A, Garcia JA, Sprenger RR, Stepanauskas R, Pachiadaki MG, Jensen ON, Herndl GJ (2017). Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics. PNAS doi: 10.1073/pnas.1708779115.
Stepanauskas, R. (2021) Single amplified genomes (SAGs) of chemoautotrophs from global deep sea samples (Dark ocean chemoautotrophs project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2017-10-27 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.666274.1 [access date]
Terms of Use
This dataset is licensed under Creative Commons Attribution 4.0.
If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.
©2020 Biological and Chemical Oceanography Data Management Office.