Dataset: Ammonia-Oxidizing Arachae (AOA) whole genome sequence accessions from samples collected during the 2006 R/V Endeavor RMP Sediment Cruise in San Francisco Bay August 2-9, 2006 (N-Cycling Microbial Communities project)

ValidatedFinal no updates expectedVersion (2017-07-03)Dataset Type:Cruise Results

Principal Investigator, Contact: Christopher Francis (Stanford University)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Spatial and Temporal Dynamics of Nitrogen-Cycling Microbial Communities Across Physicochemical Gradients in the San Francisco Bay Estuary (N-Cycling Microbial Communities)

Cite Dataset
Spatial Extent: N:38.10 E:-121.81 S:38.02 W:-122.36

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This dataset contains Ammonia-Oxidizing Archaea (AOA) sequence accession information National Center for Biotechnology Information (NCBI).  Samples were collected during the R/V Endeavor RMP Sediment Cruise in San Francisco Bay August 2-9, 2006.

For related datasets, click on the project link at the top of the page.

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Related Publications

Methods
Blainey, P. C., Mosier, A. C., Potanina, A., Francis, C. A., & Quake, S. R. (2011). Genome of a Low-Salinity Ammonia-Oxidizing Archaeon Determined by Single-Cell and Metagenomic Analysis. PLoS ONE, 6(2), e16626. doi:10.1371/journal.pone.0016626
Methods
Mosier, A. C., Allen, E. E., Kim, M., Ferriera, S., & Francis, C. A. (2012). Genome Sequence of “Candidatus Nitrosoarchaeum limnia” BG20, a Low-Salinity Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary. Journal of Bacteriology, 194(8), 2119–2120. doi:10.1128/jb.00007-12
Methods
Mosier, A. C., Allen, E. E., Kim, M., Ferriera, S., & Francis, C. A. (2012). Genome Sequence of “Candidatus Nitrosopumilus salaria” BD31, an Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary. Journal of Bacteriology, 194(8), 2121–2122. doi:10.1128/jb.00013-12

Francis, C. (2017) Ammonia-Oxidizing Arachae (AOA) whole genome sequence accessions from samples collected during the 2006 R/V Endeavor RMP Sediment Cruise in San Francisco Bay August 2-9, 2006 (N-Cycling Microbial Communities project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version ) Version Date 2017-07-03 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/684211 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation