Dataset: Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized protein spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018

Name: Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized protein spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018
Published: 2020-04-30
Keywords: oceans

Final no updates expectedDOI: 10.26008/1912/bco-dmo.787147.1Version 1 (2020-04-30)Dataset Type:Cruise Results

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes, analyzed by 2D LC-MS/MS in units of normalized protein spectral counts. Samples were collected in North Atlantic surface waters, at station BATS (Bermuda Atlantic Time-series Study), and station ALOHA (A Long-Term Oligotrophic Habitat Assessment) between 2000 and 2018.

Cite Dataset

Spatial Extent: N:23.22 E:-21.59 S:0.17 W:-158.00
Temporal Extent: 2000-07-27 - 2018-03-18

XXX

Views

XX

Downloads

X

Citations

An alternative form of these data are available as dataset:
"Trichodesmium field metaproteomes - protein spectral counts in alternative format" https://www.bco-dmo.org/dataset/787078

Related datasets:
Trichodesmium field metaproteomes - sequence fasta: https://www.bco-dmo.org/dataset/787181
Trichodesmium field metaproteomes - peptide spectral counts: https://www.bco-dmo.org/dataset/787168
Trichodesmium sample provenance: https://www.bco-dmo.org/dataset/787093 - Sample provenance file, which includes sample locations, filter sizes

Related Datasets

Different Version

Dataset: https://doi.org/10.26008/1912/bco-dmo.787078.1

Held, N., & Saito, M. (2020). <i>Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018</i> [Data set]. Biological and Chemical Oceanography Data Management Office (BCO-DMO). https://doi.org/10.26008/1912/BCO-DMO.787078.1

Related Publications

Methods

Saito, M. A., McIlvin, M. R., Moran, D. M., Goepfert, T. J., DiTullio, G. R., Post, A. F., & Lamborg, C. H. (2014). Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers. Science, 345(6201), 1173–1177. https://doi.org/10.1126/science.1256450

Methods

Shih, P. M., Wu, D., Latifi, A., Axen, S. D., Fewer, D. P., Talla, E., … Kerfeld, C. A. (2012). Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proceedings of the National Academy of Sciences, 110(3), 1053–1058. doi:10.1073/pnas.1217107110

Loading...Still loading...Hang on... This is taking longer than expected!

Dataset: Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized protein spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018

Final no updates expectedDOI: 10.26008/1912/bco-dmo.787147.1Version 1 (2020-04-30)Dataset Type:Cruise Results

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

Cite Dataset

Spatial Extent: N:23.22 E:-21.59 S:0.17 W:-158.00
Temporal Extent: 2000-07-27 - 2018-03-18

XXX

Views

XX

Downloads

X

Citations

An alternative form of these data are available as dataset:
"Trichodesmium field metaproteomes - protein spectral counts in alternative format" https://www.bco-dmo.org/dataset/787078

Related Datasets

Different Version

Dataset: https://doi.org/10.26008/1912/bco-dmo.787078.1

Related Publications

Methods

Dataset: Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized protein spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

Metadata

XXX

XX

X

Related Datasets

Related Publications

Dataset: Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized protein spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

Metadata

XXX

XX

X

Related Datasets

Related Publications