File(s) | Type | Description | Action |
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microbe_abund.csv (11.69 KB) | Comma Separated Values (.csv) | Primary data file for dataset ID 809670 | Download |
Microbial abundance of phytoplankton and bacteria from RV/Tangaroa cruise TAN1810SALP to Chatham Rise vicinity, east of New Zealand, Oct - Nov. 2018.
Sampling and analytical procedures: Samples (15 mL) were collected from hydrographic casts with Niskin bottles on a CTD-rosette for live ship-board and preserved shore-based flow cytometry analyses for profiles of phytoplankton and heterotrophic (non-pigmented) bacteria abundance. Live samples (~800 uL) were analyzed within 2 hours of collection (and usually sooner), kept in the dark at room temperature prior to analysis. Samples (2 mL) for shore-based analyses were aliquoted into cryovials, preserved with a final concentration of 0.5% paraformaldehyde (Electron Microscopy Sciences, methanol-free), then flash frozen in liquid nitrogen. After freezing, samples were transferred to a -80°C freezer. Upon completion of the cruise, samples were transferred to a charged dry shipper for transport to the University of Hawaii. Samples were thawed in batches, stained with the DNA stain Hoechst 34580 for 1 hour (1 ug/ml, final concentration), then quantitatively analyzed (100 uL).
Offline analysis software: FlowJo Software (Mac) Version 10.6.1. Ashland, OR: Becton Dickinson and Company; 2019.Offline analysis software: FlowJo Software (Mac) Version 10.6.1. Ashland, OR: Becton Dickinson and Company; 2019.
Selph, K. E. (2021) Microbial abundance of phytoplankton and bacteria from RV/Tangaroa cruise TAN1810SALP to Chatham Rise vicinity, east of New Zealand, Oct - Nov. 2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-04-20 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.809670.1 [access date]
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