Dataset: RNA-Seq sample information and accessions numbers for the copepods Neocalanus flemingeri (Prince William Sound, Gulf of Alaska)(2015-2017) and Labidocera madurae (Kane‘ohe Bay, Oahu, Hawaii)(2017)

Under revisionDOI: 10.26008/1912/bco-dmo.821289.1Version 2 (2020-12-11)Dataset Type:Other Field Results

Lead Principal Investigator: Daniel K. Hartline (University of Hawaiʻi at Mānoa)

Principal Investigator: Petra H. Lenz (University of Hawaiʻi at Mānoa)

Co-Principal Investigator: Russell R. Hopcroft (University of Alaska Fairbanks)

Scientist: Vittoria Roncalli (University of Hawaiʻi at Mānoa)

Data Manager: Matthew C. Cieslak (University of Hawaiʻi at Mānoa)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Proposal: Optimizing Recruitment of Neocalanus copepods through Strategic Timing of Reproduction and Growth in the Gulf of Alaska (Neocalanus Gulf of Alaska)

Abstract

This dataset includes accession information for RNA-seq data for the copepods Neocalanus flemingeri and Labidocera madurae used to generate de novo reference transcriptomes and for gene expression analysis. N. flemingeri adult females (CVI) were collected in Prince Williams Sound (Gulf of Alaska) during the fall (September 2015 and 2017) oceanographic cruises of the Seward line long-term observation program (ltop)(http://www.sfos.uaf.edu/sewardline/) and Northern Gulf of Alaska Long-Term Ecologi...

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This dataset includes accession information for RNA-seq data for the copepods Neocalanus flemingeri and Labidocera madurae used to generate de novo reference transcriptomes and for gene expression analysis. N. flemingeri adult females (CVI) were collected in Prince Williams Sound (Gulf of Alaska) during the fall (September 2015 and 2017) oceanographic cruises of the Seward line long-term observation program (ltop)(http://www.sfos.uaf.edu/sewardline/) and Northern Gulf of Alaska Long-Term Ecological Research Program (NGA LTER). For each sample collection date and preservation dates are listed. Labidocera madurae adult females (CVI) and mixed copepodid stages (CIII-CV) were collected in Kane‘ohe Bay, Oahu (Hawaii) in August 2015.

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Related Publications

Results
Lenz, P. H., & Roncalli, V. (2019). Diapause within the Context of Life-History Strategies in Calanid Copepods (Calanoida: Crustacea). The Biological Bulletin, 237(2), 170–179. doi:10.1086/705160
Results
Roncalli, V., Christie, A. E., Sommer, S. A., Cieslak, M. C., Hartline, D. K., & Lenz, P. H. (2017). A deep transcriptomic resource for the copepod crustacean Labidocera madurae: A potential indicator species for assessing near shore ecosystem health. PLOS ONE, 12(10), e0186794. doi:10.1371/journal.pone.0186794
Results
Roncalli, V., Cieslak, M. C., Hopcroft, R. R., & Lenz, P. H. (2020). Capital Breeding in a Diapausing Copepod: A Transcriptomics Analysis. Frontiers in Marine Science, 7. doi:10.3389/fmars.2020.00056
Results
Roncalli, V., Cieslak, M. C., Sommer, S. A., Hopcroft, R. R., & Lenz, P. H. (2018). De novo transcriptome assembly of the calanoid copepod Neocalanus flemingeri: A new resource for emergence from diapause. Marine Genomics, 37, 114–119. doi:10.1016/j.margen.2017.09.002
Results
Roncalli, V., Sommer, S. A., Cieslak, M. C., Clarke, C., Hopcroft, R. R., & Lenz, P. H. (2018). Physiological characterization of the emergence from diapause: A transcriptomics approach. Scientific Reports, 8(1). doi:10.1038/s41598-018-30873-0

Hartline, D., Lenz, P., Hopcroft, R., Roncalli, V., Cieslak, M. (2020) RNA-Seq sample information and accessions numbers for the copepods Neocalanus flemingeri (Prince William Sound, Gulf of Alaska)(2015-2017) and Labidocera madurae (Kane‘ohe Bay, Oahu, Hawaii)(2017). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-09-11 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.821289.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation