Dataset: pmoA sequences amplified from DNA extracted from Whillans Subglacial Lake sediment in West Antarctica

This dataset has not been validatedPreliminary and in progressVersion 1 (2020-09-02)Dataset Type:Unknown

Principal Investigator: Alexander Michaud (Montana State University)

Contact: John C. Priscu (Montana State University)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Center for Dark Energy Biosphere Investigations (C-DEBI)

Project: Microbial carbon cycling beneath the West Antarctic Ice Sheet (SLW C Cycling)

Cite Dataset

These are pmoA sequences amplified from DNA extracted from Whillans Subglacial Lake sediment to understand the microorganisms responsible for methane oxidation. The pmoA sequences have been deposited in GenBank under accession numbers KX589304-KX589461 (see https://www.ncbi.nlm.nih.gov/popset/1231961266) and KX784213-KX84230 (see https://www.ncbi.nlm.nih.gov/popset/1231961582).  

The MiMARKS forms can be found in the Microbial Antarctic Resource System (mARS) under resource http://mars.biodiversity.aq/resources/198. MiMARKS = Minimum information about a marker gene sequence.

Related Datasets

IsSupplementTo
Dataset: Geochemistry
Relationship Description: Related proA sequences (in GenBank) from the same samples.
Michaud, A., Priscu, J. C. (2020) Geochemical data collected from Whillans Subglacial Lake sediment cores in West Antarctica. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2020-08-27 http://lod.bco-dmo.org/id/dataset/822288
References
Dataset: https://www.ncbi.nlm.nih.gov/popset/1231961266
Michaud,A.B., Dore,J.E., Achberger,A.M., Christner,B.C., Mitchell,A.C., Skidmore,M.L., Vick-Majors,T.J. and Priscu,J.C. (2017). Uncultured bacterium particulate methane monooxygenase subunit A (pmoA) gene, partial cds. The National Center for Biotechnology Information PopSet: 1231961266. Available from https://www.ncbi.nlm.nih.gov/popset/1231961266
References
Dataset: https://www.ncbi.nlm.nih.gov/popset/1231961582
Michaud,A.B., Dore,J.E., Achberger,A.M., Christner,B.C., Mitchell,A.C., Skidmore,M.L., Vick-Majors,T.J. and Priscu,J.C. (2017). uncultured bacterium particulate methane monooxygenase subunit A (pmoA) gene, partial cds. The National Center for Biotechnology Information PopSet: 1231961582. Available from https://www.ncbi.nlm.nih.gov/popset/1231961582
References
Dataset: http://mars.biodiversity.aq/resources/198
Priscu J (2019). Geomicrobiology of Antarctic Subglacial Environments - Subglacial Lake Whillans. GBASE2020_part2. Version 1.1. SCAR - Microbial Antarctic Resource System. http://mars.biodiversity.aq/resources/198

Related Publications

Results
Achberger, A. M., Christner, B. C., Michaud, A. B., Priscu, J. C., Skidmore, M. L., & Vick-Majors, T. J. (2016). Microbial Community Structure of Subglacial Lake Whillans, West Antarctica. Frontiers in Microbiology, 7. doi:10.3389/fmicb.2016.01457
Results
Christner, B. C., Priscu, J. C., Achberger, A. M., Barbante, C., Carter, S. P., … Vick-Majors, T. J. (2014). A microbial ecosystem beneath the West Antarctic ice sheet. Nature, 512(7514), 310–313. doi:10.1038/nature13667

Michaud, A. (2020) pmoA sequences amplified from DNA extracted from Whillans Subglacial Lake sediment in West Antarctica. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-09-02 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/823123 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

NSF Logo©2020 Biological and Chemical Oceanography Data Management Office.
Funded by the U.S. National Science Foundation