Dataset: Copepod track data from a set of 4 experiments quantifying the foraging behavior and ingestion by copepods within different distributions of marine snow

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.880645.1Version 1 (2022-09-19)Dataset Type:experimental

Principal Investigator: Jennifer Prairie (University of California-San Diego)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)


Project: CAREER: Small-scale plankton-aggregate dynamics and the biological pump: Integrating mathematical biology in research and education (PlanktonAggDyn)


Abstract

This dataset results from a set of four experiments conducted to quantify the foraging behavior and ingestion by copepods within different distributions of marine snow. Experiments were conducted at the University of San Diego in the Prairie research lab. This dataset includes Matlab files containing the copepod track data from these experiments.

Below are the descriptions of the Matlab ".mat" data files in the attached file "MarineSnowLayers_CopepodTracksData.zip".

All Matlab files are named in the following format:

EXPX_TR_CAMYY_Track_ZZ

where "X" will be 1, 2, 3, or 4 corresponding to the Experiment number of the track,
"TR" will be CG (representing control with gradient treatment), CNG (representing control with no gradient treatment), Homogenous (representing homogenous treatment), or Layer (representing layer treatment),
"YY" will be either 01 or 02 representing the camera number, and
"ZZ" will be a number representing the copepod track number.

The total number of tracks varies by treatment and experiment according to the table below:

Exp.              Treatment               Camera         Number of Tracks

1                   CG                          01                 36

1                   CNG                       01                 28

1                   Homogenous           01                 25

1                   Layer                      01                 52

1                   CG                          02                 20

1                   CNG                       02                 26

1                   Homogenous           02                 34

1                   Layer                      02                 40

2                   CG                          01                 37      

2                   CNG                       01                 23

2                   Homogenous           01                 42

2                   Layer                      01                 69

2                   CG                          02                 26

2                   CNG                       02                 25

2                   Homogenous           02                 28

2                   Layer                      02                 50

3                   CG                          01                 26

3                   CNG                       01                 23

3                   Homogenous           01                 23

3                   Layer                      01                 62

3                   CG                          02                 15

3                   CNG                       02                 21

3                   Homogenous           02                 25

3                   Layer                      02                 30

4                   CG                          01                 27

4                   CNG                       01                 30

4                   Homogenous           01                 19

4                   Layer                      01                 59

4                   CG                          02                 28

4                   CNG                       02                 20

4                   Homogenous           02                 32

4                   Layer                      02                 52

 

Each Matlab file contains the same three vectors depending on the camera:
cop_xloc_cm (for Camera 1) or cop_yloc_cm (for Camera 2)
cop_zloc_cam1_cm (for Camera 1) or cop_zloc_cam2_cm (for Camera 2)
time_cam1 (for Camera 1) or time_cam2 (for Camera 2)

The cop_xloc_cm/cop_yloc_cm provide the horizontal location of the copepod in cm from the edge of the tank (defined as the x direction for Camera 1 and the y direction for Camera 2).

The cop_zloc_camX_cm vectors provide the vertical location of the copepod in cm from the bottom of the tank in Cameras 1 and 2, respectively.

And the time_camX vectors provide the time in seconds since the first copepod appeared in the field of view.

All three of the vectors in each individual Matlab file are the same length and indicate the number of sequential images that the copepod was tracked.


Related Datasets

IsRelatedTo

Dataset: Ingestion - Copepod Foraging in Marine Snow Layer Experiments 2020
Prairie, J. (2023) Copepod gut pigment and tank water pigment data from a set of 4 experiments quantifying the foraging behavior and ingestion by copepods within different distributions of marine snow. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-09-20 doi:10.26008/1912/bco-dmo.880669.1

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