Data File(s)	Type	Description	Action
922006_v1_whiteband-exposure-survival.csv (39.92 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 922006, version 1. This table includes the disease state for corals in the exposure experiment. See related Supplemental File (sample_metadata.csv) which contains additional metadata and sequence accessions at NCBI.	Download View Table What is ERDDAP? SUBSET DATA VIEW TABLE CSV TSV MATLAB netCDF

Supplemental File(s)	Type	Description	Action
sample_metadata.csv (8.16 KB)	Comma Separated Values (.csv)	Metadata & accession numbers for sequences at The National Center for Biotechnology Information (NCBI) under BioProject PRJNA950067. Columns in this data table are: ID, Fully descriptive colony ID genotype, Putative Genotype location, Region of origin (Florida or Panama) reef, Reef of origin (of initial genotype in Florida) lat, Latitude, decimal degrees lon, Longitude, decimal degrees longread_accession, NCBI Accession number for long reads used in genome assembly WGS_accession, NCBI Accession number for short reads used in whole genome sequencing T[37]_[HD]_RNA_accession, NCBI Accession number for RNAseq reads from Time point 3 or 7 (T3/T7) in either health (H) or disease (D) exposed treatments.	Download View Table

Files

Filename: 922006_v1_whiteband-exposure-survival.csv (39.92 KB)
Type: Comma Separated Values (.csv)
Description: Primary data file for dataset ID 922006, version 1. This table includes the disease state for corals in the exposure experiment. See related Supplemental File (sample_metadata.csv) which contains additional metadata and sequence accessions at NCBI.

Download View Table

Supplemental Files

Filename: sample_metadata.csv (8.16 KB)
Type: Comma Separated Values (.csv)
Description: Metadata & accession numbers for sequences at The National Center for Biotechnology Information (NCBI) under BioProject PRJNA950067. Columns in this data table are: ID, Fully descriptive colony ID genotype, Putative Genotype location, Region of origin (Florida or Panama) reef, Reef of origin (of initial genotype in Florida) lat, Latitude, decimal degrees lon, Longitude, decimal degrees longread_accession, NCBI Accession number for long reads used in genome assembly WGS_accession, NCBI Accession number for short reads used in whole genome sequencing T[37]_[HD]_RNA_accession, NCBI Accession number for RNAseq reads from Time point 3 or 7 (T3/T7) in either health (H) or disease (D) exposed treatments.

Download View Table

Related NCBI BioProjects containing genomic/transcriptomic data from this study (see Supplemental Files for accession metadata):

mRNA sequencing from 48 A. cervicornis colonies differentially exposed to white band disease at multiple time points: NCBI BioProject PRJNA949884 (https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA949884)

Whole genome sequencing of DNA from 96 A. cervicornis colonies: NCBI BioProject PRJNA950067 (https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA950067)

Short and long read data and Genome Assembly for the Coral Restoration Foundation K2 genotype of A. cervicornis: NCBI BioProject PRJNA948411 (https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA948411)

Related Datasets

Northeastern University (2023). Acropora cervicornis genomic basis of disease resistance. 2023/03. NCBI:BioProject: PRJNA950067. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA950067.

Northeastern University (2023). Acropora cervicornis isolate:K2 Genome sequencing and assembly. 2023/10. In: NCBI:BioProject: PRJNA948411 [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA948411.

Northeastern University (2023). Differential gene expression Acropora cervicornis. 2023/03. In: NCBI:BioProject: PRJNA949884. [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA949884.

Related Publications

Results

Selwyn, J. D., & Vollmer, S. V. (2023). Whole genome assembly and annotation of the endangered Caribbean coral Acropora cervicornis. G3: Genes, Genomes, Genetics, 13(12). https://doi.org/10.1093/g3journal/jkad232

Results

Vollmer, S. V., Selwyn, J. D., Despard, B. A., & Roesel, C. L. (2023). Genomic signatures of disease resistance in endangered staghorn corals. Science, 381(6665), 1451–1454. https://doi.org/10.1126/science.adi3601

Methods

Gignoux-Wolfsohn, S. A., Marks, C. J., & Vollmer, S. V. (2012). White Band Disease transmission in the threatened coral, Acropora cervicornis. Scientific Reports, 2(1). https://doi.org/10.1038/srep00804

Methods

Love, R. R., Weisenfeld, N. I., Jaffe, D. B., Besansky, N. J., & Neafsey, D. E. (2016). Evaluation of DISCOVAR de novo using a mosquito sample for cost-effective short-read genome assembly. BMC Genomics, 17(1). https://doi.org/10.1186/s12864-016-2531-7

Software

Vollmer, S. V., Selwyn, J. D., Despard, B. A., & Roesel, C. L. (2023). Genomic Signatures of Disease Resistance in Endangered Staghorn Corals [Data set]. Zenodo. https://doi.org/10.5281/ZENODO.8095056

Dataset: Acropora cervicornis genomic/trancriptomic sequence accessions with associated data on tank exposure to white band disease and survival outcomes with corals collected from Florida, USA and Bocas del Toro, Panama in 2021

Principal Investigator, Contact: Steven V. Vollmer (Northeastern University)

Scientist, Technician: Charles L. Roesel (Northeastern University)

Scientist, Data Manager: Jason D. Selwyn (Texas A&M, Corpus Christi)

Student: Brecia Douglas (Northeastern University)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Multi-omic bases of coral disease resistance (coral disease resistance)

Abstract

Files

Supplemental Files

Related Datasets

Related Publications