Dataset: Bacteria Counts CTD Bottle Measurements from CTD samples collected during R/V Hugh R. Sharp cruise HRS2204 from Apr to May 2022

Preliminary and in progressVersion 1 (2024-12-16)Dataset Type:Cruise ResultsDataset Type:Other Field Results

Principal Investigator: Matthew Rau (Pennsylvania State University)

Scientist: Kimberlee Thamatrakoln (Rutgers University)

Student: Austin Grubb (Rutgers University)

BCO-DMO Data Manager: Audrey Mickle (Woods Hole Oceanographic Institution)


Project: Collaborative Research: The importance of particle disaggregation on biogeochemical flux predictions (Disaggregation)


Abstract

These data include measurements of free bacteria in whole seawater and particle-associated bacteria for particles larger than 1.2 microns from CTD bottle water samples collected during a cruise on the Northeast Continental Shelf to study particle disaggregation. One cruise was completed aboard the R/V Hugh R. Sharp from 2022-04-21 through 2022-05-02 (HRS 22-04), which visited a variety of stations and hydrodynamic environments associated with the Northeast Continental Shelf of the United States....

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This cruise visited eight stations on the Northeastern U.S. Continental Shelf. Latitudes and longitudes provided per sample in the data, but general station descriptions are below.

  • Station 1 - Station 3: Georges Bank near the Gulf of Maine. Approximate location was 41.7 N, 68 W. Samples acquired from 0 m to 25 m depths.
  • Station 4: The Great South Channel near the Gulf of Maine. Approximate location was 41.6 N, 69 W. Samples acquired from 0 m to 150 m depths.
  • Station 5: Only one CTD profile was taken before this station was aborted due to weather. No data acquired. Station location was 40.8 N, 70.5 W.
  • Station 6: Off the coast of Martha's Vineyard. Approximate location was 41.3 N, 70.5 W. Samples acquired from 0 m to 10 m depths.
  • Station 7: At the mouth of the Sakonnet River near Newport, Rhode Island. Approximate location was 41.5 N, 71.2 W. Samples acquired from 0 m to 10 m depths.
  • Station 8: Hudson Canyon near New York. Approximate location was 39.5 N, 72.3 W. Samples acquired from 0 m to 200 m depths.

Whole seawater and 1.2 um filtrates were fixed in final concentration of 0.5% glutaraldehyde for 15 min at 4 degrees, then flash frozen in liquid N2 and stored at -20 degree until analysis. Samples were thawed at room temperature and 10 ug/ml Tween-80 (final concentration) was added to each. Samples were sonicated for 1 min in a water bath (50W). A 20,000-fold dilution of Sybr Green I Nucleic Acid stain (Thermo-Fisher) was made in 0.2 um filtered 1XTE. 5ul of sample was mixed with 245 ul of 1X TE/Sybr Green I in a 96 well microtiter plate. Samples were counted on an Accrui C6 Plus flow cytometer on a fast flow rate, triggered off FL1-H<1000 for 30 sec. 


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