Related Publication

DOI: 10.1111/1462-2920.13023

Citation Style: APA

Citation Text:

Parada, A. E., Needham, D. M., & Fuhrman, J. A. (2015). Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples. Environmental Microbiology, 18(5), 1403–1414. doi:10.1111/1462-2920.13023

Datasets (15)

Dataset	Relation
515F-926R 16S rRNA gene sequencing accessions from seawater and sediment samples from R/V Falkor FK141109 and R/V Thompson TN309 from the Mariana and Kermadec trenches, 2014 (Mariana Perspectives project)	Methods
16S and 18S rRNA gene amplicon sequence links and metadata from microbial mesocosms spiked with 2-heptyl-4-quinolone (HHQ) experiments, Bergen, Norway, May 2017	Methods
Site descriptions and physical environmental conditions in coral microbiomes in the Florida Keys during 2013 (Coral Microbial Relationships project)	Methods
Diel, daily, and spatial variation of coral reef seawater microbial communities from US Virgin Islands, 2017	Methods
Flow cytometry and nutrient analyses data from a tidal study over 48 hours of mangrove, seagrass, and seawater from the US Virgin Islands in July of 2017	Methods
Supplementary Table 4C: Statistics of reads retained through bioinformatic processing of iTAG data for the 11 samples and control samples and metatranscriptome data.	Methods
Application of a rapid microbiome characterization pipeline to corals afflicted with Stony Coral Tissue Loss Disease in St. Thomas, US Virgin Islands.	Methods
16S rRNA sequences from subsurface microbial communities (Blackwood Sinkhole)	Methods
Sediment NO3 reduction rates, associated genes, and environmental data from bimonthly samples collected along the York River Estuary from June 2018 to April 2019	Methods
NCBI accession numbers describing 16S rRNA and 16S rRNA gene amplicon sequences from sediment samples collected offshore of San Francisco, Califronia, USA in March 2017 on R/V Oceanus cruise OC1703A	Methods
Biogeochemistry, metabolomics, and metagenomics of Florida's Coral Reef from sampling conducted over 15 days in June 2019	Methods
Seawater microbial communities within coral reef seawater change over six years in response to disturbance	Methods
Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi	Methods
Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi	Methods
Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish collected on the north shore of Mo’orea, French Polynesia, Oct 2020 and Oct 2021	Methods